Mac mini (ppc) 偵峔憿夝愅僜僼僩傪僀儞僗僩乕儖

Mac mini 1.25GHz G4 / OS10.4 Tiger 偵僞儞僷僋幙偺棫懱峔憿夝愅僜僼僩傪僀儞僗僩乕儖偟偨帪偺庤弴

丂揳捤棽巎乮搶嫗擾岺戝妛戝妛堾墳梡惗柦壔妛愱峌乯

儅僯儏傾儖廤堦棗偵栠傞

丂埲壓偺暥拞丄乽僐儞僺儏乕僞柤乿乽儐乕僓乕柤乿偼偦傟偧傟帺暘偺僐儞僺儏乕僞偍傛傃儐乕僓乕偺柤慜傪擖傟傞丅

1. X11 偺僀儞僗僩乕儖
丂僞儞僷僋幙偺棫懱峔憿夝愅僜僼僩傪僀儞僗僩乕儖偡傞偵偼丄Unix 偺僌儔僼傿僢僋傪扴偆 X11 傪僀儞僗僩乕儖偡傞昁梫偑偁傞丅峸擖帪偵 X11 偼僀儞僗僩乕儖偝傟偰偄側偄偑丄晅懏偺 DVD 偵 Apple 偺僆僼傿僔儍儖側 X11 偑偁傞偺偱丄偙傟傪僀儞僗僩乕儖偟偨丅

(1) 晅懏偺 DVD 傛傝 Optional Installs.mpkg 傪僋儕僢僋偡傞丅

(2) X11 傪慖戰偟偰僀儞僗僩乕儖丅

(3) 僨傿儀儘僢僷乕梡僜僼僩僂僃傾傪僀儞僗僩乕儖丗峔憿夝愅偼丄婎杮揑偵婛懚偺僜僼僩僂僃傾傪棙梡偟偰峴偆傕偺側偺偱丄僾儘僌儔儈儞僌偦偺傕偺偼昁梫偱偼側偄偑丄僜僼僩僂僃傾偺拞偵偼僜乕僗僐乕僪傪僐儞僷僀儖乮曄姺乯偟偰僀儞僗僩乕儖偡傞昁梫偑偁傞傕偺傕偁傞丅偙偺偨傔 C 僐儞僷僀儔偺僀儞僗僩乕儖傪峴偆丅傑偨丄屻弎偡傞 fink 偺僀儞僗僩乕儖偺慜偵僨傿儀儘僢僷乕梡偺僜僼僩僂僃傾傪僀儞僗僩乕儖偟偰偍偄偨曽偑傛偄偺偱丄偙偙偱偼丄晄梫側僜僼僩僂僃傾傕偁傞偑丄娙堈揑偵 Xcode Tools 堦幃傪堦妵偟偰僀儞僗僩乕儖偟偨丅
丂傾僾儕働乕僔儑儞偺僼僅儖僟 -> Installers -> Xcode Tools -> XcodeTools.mpkg 傪僟僽儖僋儕僢僋偡傞丅偁偲偼僀儞僗僩乕儔偺巜帵偵廬偭偰丄偦偺傑傑僀儞僗僩乕儖偟偨丅

(4) X11 偺婲摦丗傾僀僐儞偑傾僾儕働乕僔儑儞偺僼僅儖僟 -> 儐乕僥傿儕僥傿偵偁傞偺偱丄僟僽儖僋儕僢僋偟偰 X11 傪婲摦偝偣傞丅

(5) 僨僼僅儖僩偱奐偔僔僃儖偼丄帤偑彫偝偔偰偙偺傑傑偩偲旕忢偵尒偯傜偔丄傑偨丄僗僋儘乕儖僶乕偑側偄偺偱晄曋偱偁傞丅 X11 偺儊僯儏乕傛傝丄傾僾儕乕働乕僔儑儞 -> 儊僯儏乕傪僇僗僞儅僀僘傪慖戰偟丄僞乕儈僫儖偺僐儅儞僪乮棑傪僟僽儖僋儕僢僋偡傞偲曄峏偱偒傞傛偆偵側傞乯傪扨側傞 xterm 傛傝丗
xterm -font 9x15bold -sl 1500 -sb
傕偆彮偟帤偑戝偒偄曽偑傛偗傟偽丗
xterm -font 10x20 -sl 1500 -sb
偲偡傞偲丄偐側傝帤偑戝偒偔尒傗偡偄傕偺偲側傞丅

丂偙偙偱偼 IRIX乮SGI 幮偺僐儞僺儏乕僞梡偺 Unix 僆儁儗乕僥傿儞僌僔僗僥儉丄愄偼峔憿夝愅梡偺僜僼僩僂僃傾偼 IRIX 梡傪懳徾偲偟偨傕偺偑懡偐偭偨乯挷偺僔僃儖晽偵怓傕曄峏偟丄埲壓偺傛偆側愝掕偵偟偨丗
xterm -font 9x15bold -sl 1500 -sb -fg white -bg midnightblue
側偍丄僼僅儞僩偺堦棗偼 xlsfonts 僐儅儞僪偱丄怓偺庬椶偼 /usr/X11R6/lib/X11/rgb.txt 偵婰弎偝傟偰偄傞丅
丂偙偺傑傑偩偲擔杮岅偑暥帤壔偗偡傞偑丄峔憿夝愅偺僜僼僩偼偡傋偰塸岅側偺偱丄栤戣偼側偄丅

2. 僔僃儖傪 tcsh 傊曄峏
丂峔憿夝愅偱巊梡偡傞僜僼僩僂僃傾偼丄C 僔僃儖偱巊梡偟偨曽偑巊偄彑庤偑傛偄傕偺偑懡偄丅IRIX 側偳偱奐敪偝傟偨傕偺偑傕偲偲側偭偰偄傞応崌偑懡偄偐傜偱偁傠偆丅偟偐偟側偑傜丄OSX 偺 Unix 偼昗弨偱偼 B 僔僃儖宯偺 bash 偑昗弨偲側偭偰偄傞丅偦偙偱丄chsh 僐儅儞僪偱昗弨偺僔僃儖傪 C 僔僃儖宯偺 tcsh 偵曄峏偟偰偍偔偲搒崌偑椙偄丅

(1) 僐儅儞僪儔僀儞忋偱 chsh 偲僞僀僾偡傞丅
(2) vi 偑婲摦偟丄尰嵼偺昗弨偺僔僃儖偑帵偝傟傞丅
(3) i 傪墴偟偰 vi 傪僀儞僒乕僩儌乕僪偵偟丄Shell: 偺峴傪 /bin/bash 傛傝 /bin/tcsh 偵曄峏偡傞丅埲壓偺傛偆偵側傞丅

# Changing user database information for 儐乕僓乕柤.
#
# (use "passwd" to change the password)
##
# Local NetInfo Database
##
Shell: /bin/tcsh丂丂丂丂<-- 偙偺峴傪彂偒懼偊偨丅
Full Name: 儐乕僓乕柤

(4) esc 僉乕傪墴偟偰 vi 傪僐儅儞僪儌乕僪偵曄偊丄:wq 傛傝丄曄峏傪僙乕僽偟廔椆偝偣傞丅
(5) 曄峏傪桳岠偵偡傞偨傔偵偼丄儅僔儞傪嵞婲摦偝偣傞昁梫偑偁傞傛偆偩丅

3. .cshrc 僼傽僀儖偺曇廤
丂.cshrc 僼傽僀儖偼 csh 傗 tcsh 偺愝掕傪婰弎偟偰偍偔僼傽僀儖偱偁傞丅偙偙偼 vi 傗 pico 偺傛偆側僥僉僗僩僄僨傿僞傪梡偄偰岲傒偵墳偠偰曇廤偡傟偽傛偄丅弶怱幰偼 pico 偱曇廤偡傞曽偑暘偐傝傗偡偄偩傠偆丅乮僐儅儞僪僾儘儞僾僩偐傜 pico .cshrc 偲僞僀僾偡傞乯丅偙偙偱偼埲壓偺傛偆偵偟偨丅

if (! $?DISPLAY) then
setenv DISPLAY :0.0
endif
set prompt = "[%c3]%# "
alias ls 'ls -F'

嵟弶偺3峴丗OSX偵昗弨偱晅懏偡傞僞乕儈僫儖偐傜偱傕 X11 偑昁梫側僜僼僩僂僃傾傪婲摦偝偣傞偨傔偺婰弎丅
師偺1峴丗僐儅儞僪僾儘儞僾僩傪僔儞僾儖偵昞帵偝偣丄僨傿儗僋僩儕偺奒憌傪昞帵偝偣傞丅偦偺傑傑偩偲[僐儞僺儏乕僞柤-no-mac-mini]儐乕僓乕柤% 偲偄偆傛偆偵挿偄僐儞僺儏乕僞偺柤慜偑忢偵昞帵偝傟偰偟傑偄栚忈傝丅
嵟屻偺堦峴丗ls 偩偗偱丄僼傽僀儖偐僼僅儖僟偐幚峴宍幃僼傽僀儖偐傪昞帵偝偣傞傛偆偵偡傞丅

4. fink 偺僀儞僗僩乕儖
丂fink 偼僀儞僞乕僱僢僩偵傛傞 Unix 偺僷僢働乕僕僜僼僩僂僃傾偺摫擖傪巟墖偡傞僜僼僩僂僃傾偱丄旕忢偵曋棙側傕偺偱偁傞丅

(1) http://fink.sourceforge.net/ 傛傝丄fink 偺僀儞僗僩乕儔傪僟僂儞儘乕僪偡傞丅2005擭12寧尰嵼丄OS10.4 梡偱堦斣怴偟偄偺偼丄Fink-0.8.0-Installer.dmg 偱偁偭偨丅
(2) 僟僂儞儘乕僪偟偰揥奐偟偨傜丄Fink 0.8.0 Installer.pkg 傪僟僽儖僋儕僢僋偟偰僀儞僗僩乕儖偟偨丅

(3) g77 偍傛傃 blt 偺僀儞僗僩乕儖丗偙偙偱偼丄CNS 偺僐儞僷僀儖側偳偵昁梫側 Fortran g77 僐儞僷僀儔傗 CCP4i 偺偨傔偵昁梫側 blt 傪僀儞僗僩乕儖偡傞丅偦傟偧傟僐儅儞僪偱丗
sudo apt-get install g77
sudo apt-get install blt
偲擖椡偟偰僀儞僗僩乕儖偟偨丅
丂側偍丄OS10.4 偱偼丄tcl/tk 偼 fink 偱 blt 傪僀儞僗僩乕儖偡傞慜偵偡偱偵僀儞僗僩乕儖偝傟偰偄傞傕偺偺丄忋婰偺 blt 偺僀儞僗僩乕儖偵傛偭偰 fink 偺 tcl/tk 偵抲偒姺偊傜傟傞偑丄栤戣偼側偄丅

5. CCP4 乮偍傛傃僨傿僗僋僀儊乕僕偑棙梡偱偒傞僜僼僩僂僃傾乯偺僀儞僗僩乕儖
丂CCP4 偼 OSX 梡偵僐儞僷僀儖偝傟偨僶僀僫儕偑偁傞偺偱僀儞僗僩乕儖偼娙扨偱偁傞丅儔僀僙儞僗搊榐偼昁偢峴偆丅
(1) CCP4 偺 FTP 僒僀僩乮擔杮崙撪偺僒僀僩 ftp://ftp.protein.osaka-u.ac.jp/mirror/ccp4乯傛傝丄嵟怴斉偺僼僅儖僟乮2005擭12寧尰嵼偩偲 5.0.2乯 -> binaries -> ccp4-5.0.2_osx_g4.dmg.gz 傪僟僂儞儘乕僪偡傞丅
(2) 僟僽儖僋儕僢僋偡傞偲 gz 宍幃偑夝搥偝傟 ccp4-5.0.2_osx_g4.dmg 偑偱偒傞丅
(3) 偱偒偨 ccp4-5.0.2_osx_g4.dmg 傪僟僽儖僋儕僢僋偡傞丅僨僗僋僩僢僾偵尰傟偨 ccp4-5.0.2_osx_g4 撪偵偼丄CCP4 偺僀儞僗僩乕儔傗儔僀僙儞僗搊榐偺僼僅乕儅僢僩側偳偑偁傞丅
(4) ccp4.g4.mpkg 傪僟僽儖僋儕僢僋偡傞偲丄/usr/local/ccp4-5.0.2 偲偄偆僨傿儗僋僩儕偵僀儞僗僩乕儖偝傟傞丅
(5) 僔僃儖傪奐偒丄/usr/local/ccp4-5.0.2/bin 偵峴偒丄ccp4.setup-csh 偲偄偆僼傽僀儖傪
sudo cp ccp4.setup-csh ccp4.setup
偲偄偆憖嶌偵傛偭偰丄ccp4.setup 偲偄偆柤慜偺僐僺乕傪嶌惉偡傞丅偙偺僀儞僗僩乕儖偺庤弴偱偼 ccp4.setup 偺廋惓偼摿偵昁梫側偄偑丄擮偺偨傔丅
(6) cd 僐儅儞僪傪擖椡偟偰儘僌僀儞帪偺奒憌乮/Users/儐乕僓乕柤乯偵峴偔丅pico .cshrc 傛傝丄.cshrc 僼傽僀儖傪奐偒丄
source /usr/local/ccp4-5.0.2/bin/ccp4.setup
偲偄偆堦峴傪壛偊傞丅

偙偺僀儞僗僩乕儖偵傛偭偰 .cshrc 偼埲壓偺傛偆偵側偭偨丅

if (! $?DISPLAY) then
setenv DISPLAY :0.0
endif
set prompt = "[%c3]%# "
alias ls 'ls -F'

test -r /sw/bin/init.csh && source /sw/bin/init.csh

source /usr/local/ccp4-5.0.2/bin/ccp4.setup

嵟弶偺5峴偼僔僃儖偺昞帵側偳偵娭偡傞峴乮慜弎乯丄師偺1峴偼 fink 偵娭偡傞峴乮fink 偺僀儞僗僩乕儖憖嶌偵傛偭偰婰弎偝傟傞乯丄嵟屻偺峴偑崱夞 CCP4 偺僀儞僗僩乕儖偵傛偭偰壛傢偭偨峴偱偁傞丅

丂側偍丄杮僜僼僩僂僃傾埲奜偵傕 OSX 梡僶僀僫儕偺僨傿僗僋僀儊乕僕傪偲偭偰偙傟傞僜僼僩僂僃傾偑偄偔偮偐偁傝丄傢偞傢偞僐儞僷僀儖偟側偔偰傕偙傟傪棙梡偟偰僀儞僗僩乕儖偡傞曽偑妝丅偡傋偰傪専徹偟偰偄側偄偺偱丄徻偟偄偙偲偼暘偐傜側偄偑丄Raster3D 側偳偼丄
http://util.ucsf.edu/local/programs/MacOSX/
偵 OSX 梡偵僐儞僷僀儖偝傟偨僨傿僗僋僀儊乕僕偑偁傞傛偆偩丅夝搥偑昁梫側傕偺偼 Stufflt Expander 側偳偱夝搥偟偰丄偲偭偰偒偨僨傿僗僋僀儊乕僕傪僀儞僗僩乕儖偡傞丅偙偺憖嶌偺偁偲偼僜僼僩僂僃傾偵傛偭偰堎側傞偑丄忋弎偺 CCP4 偺僀儞僗僩乕儖偺庤弴偲摨條偵愝掕僼傽僀儖偺偁傝偐乮偡側傢偪 source /usr/local/... .../愝掕僼傽僀儖偲偄偆婰弎乯傪 .cshrc 偵堦峴壛偊傞偐丄揔摉側僷僗乮椺偊偽丄set path = ( $path /usr/local/bin )側偳乯傪 .cshrc 偵婰弎偡傞丅

6.丂Coot 偺僀儞僗僩乕儖
(1) Bill Scott 偺 OSX 梡 Coot 偺儁乕僕 http://xanana.ucsc.edu/~wgscott/xtal/wiki/index.php/Installing_Coot_on_OS_X
偵僗僞儞僪傾儘乕儞偱摦偔僜僼僩偺僨傿僗僋僀儊乕僕偑偁傞偺偱丄偙偙偐傜偲偭偰偔傞偲妝丅
(2) 僟僂儞儘乕僪偟偨埑弅僼傽僀儖傪僟僽儖僋儕僢僋偟偰夝搥偡傞丅
(3) 偱偒偨僨傿僗僋僀儊乕僕乮椺偊偽 coot-x.x.x-intel-ppc.dmg乯傪僟僽儖僋儕僢僋偡傞偲丄
coot-x.x.x-intel-ppc 偲偄偆僼僅儖僟偑偱偒傞偺偱丄偙傟傪僴乕僪僨傿僗僋偵僪儔僢僌偟偰僐僺乕偡傞丅
(4) coot-x.x.x-intel-ppc 僼僅儖僟撪偺 usr 僼僅儖僟撪偺 local 僼僅儖僟撪偺 coot 僼僅儖僟傪堏摦偡傞丅
僔僃儖傪傂傜偄偰 cd 僐儅儞僪偱 coot-x.x.x-intel-ppc/usr/local 偺奒憌偵峴偒丄
sudo mv coot /usr/local 偱堏摦偡傞丅乮昁梫側応崌偼偙偺僼僅儖僟偺懏惈傪 sudo chown -R ... 僐儅儞僪側偳傪梡偄偰曄峏偡傞丅乯
(5) pico 側偳偱 .cshrc 僼傽僀儖傪奐偒丄 set path = ( /usr/local/coot/bin $path ) 偲偄偆堦峴傪壛偊傞

7.丂CNS 偺僀儞僗僩乕儖
(1) CNS 偺僒僀僩乮http://cns.csb.yale.edu/v1.2/乯偵峴偭偰 Download 偐傜儕僋僄僗僩僼僅乕儉傪憲怣偡傞丅
(2) 儊乕儖偱僷僗儚乕僪偑憲晅偝傟偰偔傞偺偱丄cns_solve_1.2_all.tar.gz 傪僟僂儞儘乕僪偡傞丅乮側偍丄Intel Mac 偵偼暿偵僐儞僷僀儖偝傟偨傕偺偑梡堄偝傟偰偄傞丅乯
(3) 僀儞僗僩乕儖偡傞応強傪寛傔丄偦偙偱 cns_solve_1.2_all.tar.gz 傪夝搥偡傞丅
偙偙偱偼僟僂儞儘乕僪偟偨 cns_solve_1.2_all.tar.gz 傪 /Users/儐乕僓乕柤/local 偵抲偒丄僟僽儖僋儕僢僋偟偰夝搥偟偨丅乮夝搥偟偨傜傕偲偺埑弅僼傽僀儖偼嶍彍偟偰傕傛偄丅乯
(4) 僔僃儖傪奐偒丄惗惉偟偨僼僅儖僟 cns_solve_1.2 偺拞偵 cd 僐儅儞僪偱擖傞丅
偙偺応崌偱偼偡側傢偪丄cd /Users/儐乕僓乕柤/local/cns_solve_1.2 偲僞僀僾丅
(5) pico 側偳偺揔摉側僄僨傿僞偱 cns_solve_env 僼傽僀儖傪奐偄偰丄
setenv CNS_SOLVE 'location of CNSsolve directory'
偺峴傪曇廤偡傞丅偙偙偱偼丄
setenv CNS_SOLVE '/Users/儐乕僓乕柤/local/cns_solve_1.2' 偲婰弎偟偨丅
(6) 僄僨傿僞傪廔椆偝偣丄cns_solve_env 僼傽僀儖偲摨偠奒憌偱 make g77install 偲僞僀僾偡傞偲僐儞僷僀儖偑巒傑傞丅
(7) 僐儞僷僀儖偑廔椆偟偨傜怴偨偵僔僃儖傪奐偒丄pico 側偳偱 .cshrc 僼傽僀儖傪奐偒丄
source /Users/儐乕僓乕柤/local/cns_solve_1.2/cns_solve_env
偲偄偆堦峴傪壛偊傞丅

8.丂XtalView 偺僀儞僗僩乕儖
XtalView 偼 SDSC乮http://www.sdsc.edu/CCMS/乯偱偼丄偡偱偵僒億乕僩偼偟偰偄側偄偙偲偑婰偝傟偰偍傝丄尰嵼偱偼丄active-sight 偺僒僀僩
乮http://www.active-sight.com/乯偐傜 XtalView 偺儔僀僙儞僗偺儁乕僕偵偨偳傝偮偔偙偲偑偱偒傞偺偱丄儕僋僄僗僩僼僅乕儉傪憲怣偟偰丄僟僂儞儘乕僪偟傑偡丅埲慜丄埲壓偺傛偆偵僀儞僗僩乕儖偟傑偟偨丅

(1) SDSC 偺僒僀僩偐傜 xtalview.tar.Z乮偳偺婡庬偱傕昁恵側僼傽僀儖乯傪僟僂儞儘乕僪偟偨丅
(2) CCP14 偺僒僀僩偵丄偐偮偰偺XtalView 偺儁乕僕偑偁傞偺偱
乮http://www.ccp14.ac.uk/ccp/web-mirrors/xtalview-mcree/pub/dem-web/乯
偙偺僒僀僩偐傜 Mac OSX 梡偺 XtalViewDarwinv1.0.tar.Z 傪僟僂儞儘乕僪偟偨丅
(3) 僀儞僗僩乕儖偡傞応強傪寛傔丄偦偙偱 xtalview.tar.Z 傪夝搥偡傞丅
偙偙偱偼 /Users/儐乕僓乕柤/local 偵 xtalview.tar.Z 傪抲偒丄
tar xvZf xtalview.tar.Z 偵傛傝夝搥偟偨丅乮夝搥偟偨傜傕偲偺埑弅僼傽僀儖偼嶍彍偟偰傕傛偄丅乯
(4) 偱偒偨 XtalView 僨傿儗僋僩儕撪乮偙偙偱偼 /Users/儐乕僓乕柤/local/XtalView 乯偵 XtalViewDarwinv1.0.tar.Z 傪抲偒丄偙偙偱丄
tar xvZf XtalViewDarwinv1.0.tar.Z 偵傛傝丄偙偺僼傽僀儖傪夝搥偡傞丅乮夝搥偟偨傜傕偲偺埑弅僼傽僀儖偼嶍彍偟偰傕傛偄丅乯
(5) 僟僂儞儘乕僪偟偨 XtalViewDarwinv1.0.tar.Z 偼丄彮偟慜偺僶乕僕儑儞偺 OSX 梡偺傕偺側偺偱丄偙偺傑傑偩偲 XtalView 偼 OS 偺僶乕僕儑儞偑暘偐傜側偄偺偱摦偐側偄丅偦偙偱埲壓偺傛偆側庤弴偱 XtalView/bin/share 偵偁傞 archosv 偑 powerpcDarwin5 傪曉偡傛偆偵偡傞丅
丂(5-1) 尰嵼偺 archosv 偺僶僢僋傾僢僾傪偲偭偨屻丄pico 側偳偱 archosv 傪曇廤偡傞丅
丂(5-2) case "$arch" in 偺師偺峴偵埲壓偺堦峴傪捛壛偡傞丅乮\ 偼僶僢僋僗儔僢僔儏乯
Darwin==8*==Power\ Macintosh) echo powerpcDarwin5 ;;
丂(5-3) 曇廤偟偨 archosv 傪曐懚偟偨屻丄./archosv 偲擖椡偟偰丄powerpcDarwin5 偲曉偡偐偳偆偐妋偐傔傞丅
(6) XtalView.env 傪 pico 側偳偱曇廤偡傞丅
偙偙偱偼 setenv XTALVIEWHOME /projects/us/XtalView 傪
setenv XTALVIEWHOME /Users/儐乕僓乕柤/local/XtalView 偲偟偨丅
(7) pico 側偳偱 .cshrc 僼傽僀儖傪奐偒丄
source /Users/儐乕僓乕柤/local/XtalView/XtalView.env
偲偄偆堦峴傪壛偊傞丅