PDB 僂僃僢僽僒僀僩偱偺 Jmol 價儏乕儚偵傛傞僞儞僷僋幙偺棫懱峔憿偺娤嶡

揳捤棽巎乮搶嫗擾岺戝妛戝妛堾墳梡惗柦壔妛愱峌乯

1. Jmol 價儏乕儚偵偮偄偰

丂埲慜偼丄僞儞僷僋幙偺棫懱峔憿傪僐儞僺儏乕僞偱娤嶡偡傞偵偼 PDB 僼傽僀儖側偳偺抦幆偑側偗傟偽埖偆偙偲偑偱偒側偐偭偨偑丄僞儞僷僋幙偺棫懱峔憿僨乕僞儀乕僗偱偁傞 PDB乮Protein Data Bank乯偱偼 Jmol 價儏乕儚婡擻傪棙梡偱偒傞傛偆偵側傝戝曄曋棙偵側偭偨丅Jmol 價儏乕儚偼丄僀儞僞乕僱僢僩僄僋僗僾儘乕儔偺傛偆側僂僃僢僽僽儔僂僓偝偊巊梡偱偒傞娐嫬偱偁傟偽丄庤帩偪偺僐儞僺儏乕僞偵偼僜僼僩僂僃傾傪僀儞僗僩乕儖偡傞昁梫偑側偔乮嵟弶偵 Java 偺僀儞僗僩乕儖偼昁梫乯丄偝傜偵婡擻偑朙晉偱僀儞僗僩乕儖偑昁梫側僞僀僾偺價儏乕儚偲斾妑偟偰傕懟怓偑側偄丄戝曄桪傟偨傕偺偱偁傞丅憗懍 Jmol 價儏乕儚傪巊梡偟偰僞儞僷僋幙偺棫懱峔憿傪尒偰傒傛偆丅

2. 僞儞僷僋幙偺棫懱峔憿傪昞帵偡傞傑偱

偙偙偱偼丄Windows 偲僀儞僞乕僱僢僩僄僋僗僾儘乕儔傪梡偄偰偄傞丅

(i)  丂PDB 偺僒僀僩 http://www.rcsb.org/pdb/ 偵傾僋僙僗偡傞丅

(ii) 丂偙偺僥僉僗僩偱偼椺偲偟偰丄僞僇傾儈儔乕僛俙乮崓嬠偺兛-傾儈儔乕僛乯傪娤嶡偡傞丅傑偢僞僇傾儈儔乕僛俙偺 PDB 僐乕僪偱偁傞 7TAA 傪儃僢僋僗偵擖椡偟丄師偵SERCH 儃僞儞傪僋儕僢僋偡傞乮娵偔埻偭偨晹暘乯丅

(iii)丂埲壓偺傛偆偵昞帵偝傟傞丅棫懱峔憿傪夝愅偟偨尋媶幰傗榑暥丄偍傛傃丄偦偺僞儞僷僋幙偺惈幙傗丄僞儞僷僋幙偵寢崌偟偰偄傞暔幙偑偁傟偽偦偺柤慜偑塸岅偱昞帵偝傟傞丅

偙偙偱偼 Jmol 偱偝傜偵徻偟偔棫懱峔憿傪尒偨偄偺偱丄僞儞僷僋幙偺峔憿偺恾偺壓偵昞帵偝傟傞 Jmol 乮娵偔埻偭偨晹暘乯傪僋儕僢僋偡傞丅

(iv)丂埲壓偺傛偆偵僙僉儏儕僥傿偵娭偡傞寈崘偑偱傞偺偱乮偙偙傑偱僐儞僺儏乕僞偺惈擻偵傕傛傞偑丄1乣2暘傎偳偐偐傞応崌偑偁傞乯丄偼偄(Y) 傪僋儕僢僋偟偰師偵恑傓丅

(v)丂僞僇傾儈儔乕僛俙偺 Cartoon 昞帵偺儕儃儞儌僨儖乮Jmol 偱偼偄傢備傞儕儃儞儌僨儖偵偼 Cartoon 偲 Ribbons 偺俀偮偺僞僀僾偁傞偑丄偙偙偱偼 Cartoon 偺曽乯偑昞帵偝傟傞丅乮偙偙傑偱僐儞僺儏乕僞偺惈擻偵傕傛傞偑丄偝傜偵1乣2暘傎偳偐偐傞応崌偑偁傞丅乯偙偙偱敀偺儌僨儖偼僞儞僷僋幙丄椢偼僇儖僔僂儉尨巕丄奃怓偲愒偱昞帵偝傟偨傕偺偼僨儞僾儞椶帡懱乮傾僇儃乕僗乯偱偁傞丅

3. 偝傑偞傑側曽朄偱僞儞僷僋幙傪昞帵偡傞

Jmol 偵偼偨偔偝傫偺婡擻偑偁傞偑丄埲壓偵婎杮揑側婡擻傪徯夘偟偨丅婎杮揑側憖嶌偵姷傟偨傜丄懠偵傕偄傠偄傠帋偟偰傒傛偆丅

乮3-1)丂婎杮揑側憖嶌丗

仠 僞儞僷僋幙傪摦偐偡偵偼丄峔憿偑昞帵偝傟偰偄傞僗儁乕僗偱埲壓偺憖嶌傪峴偆丅

丒夞揮丂丂丗儅僂僗偺嵍儃僞儞傪僪儔僢僌

丒奼戝弅彫丗Shift 僉乕傪墴偟側偑傜儅僂僗偺嵍儃僞儞傪僪儔僢僌

仠丂儊僯儏乕偺昞帵丗儅僂僗偺塃儃僞儞傪僋儕僢僋

埲壓偺傛偆側僾儖僟僂儞儊僯儏乕偑昞帵偝傟傞丅

(3-2)丂昞帵偝傟偰偄傞儌僨儖傪徚嫀偡傞丗

儌僨儖傪暿偺昞帵偵曄偊偨偄応崌丄傑偢埲壓偺俀抜奒偺憖嶌傪峴偆偙偲偵傛偭偰尰嵼昞帵偝傟偰偄傞儌僨儖傪徚嫀偡傞丅偙偺憖嶌偺屻偵丄(3-3) 偱弎傋傞傛偆側憖嶌偵傛傝擟堄偺儌僨儖傪昞帵偝偣傞偙偲偑偱偒傞丅

(i)  僾儖僟僂儞儊僯儏乕傛傝 Select 仺 None 傪慖傃丄

(ii) 僾儖僟僂儞儊僯儏乕傛傝 Select 仺 Display Selected Only 傪慖傇

偙傟偱昞帵偝傟偰偄傞儌僨儖偑徚嫀偝傟偨丅

(3-3)丂擟堄偺儌僨儖傪昞帵偝偣傞丗

仠丂傑偢丄儌僨儖偺僷乕僣偼

丒僞儞僷僋幙

丒悈

丒婎幙側偳丄悈埲奜偱僞儞僷僋幙偵寢崌偟偰偄傞暘巕乮儕僈儞僪偲屇傇乯

偺俁偮偐傜峔惉偝傟偰偄傞偙偲傪棟夝偟傛偆丅

婎杮揑偵偼丄僾儖僟僂儞儊僯儏乕傛傝 Select 偱擟堄偺僷乕僣傪慖傃丄Render 偱慖戰偟偨僷乕僣偺昞帵朄傪寛掕偡傞偲偄偆偙偲傪孞傝曉偣偽丄岲傒偺儌僨儖傪昞帵偡傞偙偲偑偱偒傞丅奺僷乕僣偺慖傃曽偼埲壓偺偲偍傝丗

丒僞儞僷僋幙 丗Select 仺 Protein 仺 All

丒悈 丗Select 仺 Hetero 仺 Water

丒儕僈儞僪 丗Select 仺 Hetero 仺 Ligand

仠丂椺丗僞儞僷僋幙傪 Cartoon 昞帵偱丄儕僈儞僪傪懢傔偺恓嬥乮Sticks乯儌僨儖偱昞帵偝偣傞偵偼埲壓偺係偮偺憖嶌傪峴偆丗

(i)  僾儖僟僂儞儊僯儏乕傛傝 Select 仺 Protein 仺 All

(ii) 僾儖僟僂儞儊僯儏乕傛傝 Render 仺 Structures 仺 Cartoon

(iii)僾儖僟僂儞儊僯儏乕傛傝 Select 仺 Hetero 仺 Ligand

(iv) 僾儖僟僂儞儊僯儏乕傛傝 Render 仺 Scheme 仺 Sticks

憖嶌搑拞偺夋柺

偆傑偔偄偔偲丄偙偺傛偆偵昞帵偝傟傞丅

 (3-4)丂嶌惉偟偨儌僨儖偵怓傪偮偗傞丗

仠 椺1丗Cartoon 昞帵偺兛僿儕僢僋僗偲兝僗僩儔儞僪偵怓傪偮偗傞

儌僨儖偑 Cartoon昞帵偝傟偨忬懺偱丄埲壓偺俀偮偺憖嶌傪峴偆丗

(i)  僾儖僟僂儞儊僯儏乕傛傝 Select 仺 Protein 仺 All

(ii) 僾儖僟僂儞儊僯儏乕傛傝 Color 仺 Cartoon 仺 By Scheme 仺 Secondary Structure

兛僿儕僢僋僗偼僺儞僋偱丄兝僗僩儔儞僪偼墿怓偱昞帵偝傟傞丅

仠 椺2丗Sticks 偁傞偄偼 Wireframe 昞帵偺丄儕僈儞僪乮僞儞僷僋幙偵寢崌偟偰偄傞悈埲奜偺暘巕乯傪悈怓偵偡傞丗

埲壓偺俀偮偺憖嶌傪峴偆丗

(i)  僾儖僟僂儞儊僯儏乕傛傝 Select 仺 Hetero 仺 Ligand

(ii) 僾儖僟僂儞儊僯儏乕傛傝 Color 仺 Bonds 仺 Cyan

乮3-5) 僷儚乕億僀儞僩偺恾傪嶌惉偡傞偵偼丗

Microsoft 偺僷儚乕億僀儞僩偼丄僐儞僺儏乕僞偵傛傞僾儗僛儞僥乕僔儑儞偵梡偄傞偨傔偺丄僗儔僀僪偺嶌惉偍傛傃敪昞傪峴偆僜僼僩僂僃傾偲偟偰嵟傕傛偔巊傢傟偰偄傞傕偺偺堦偮偱偁傞丅昞帵偟偨儌僨儖傪僷儚乕億僀儞僩偺僗儔僀僪偵偡傞嵟傕娙扨側曽朄偼夋柺偵昞帵偝傟偨傕偺傪揬傝晅偗偨屻丄晄梫側晹暘傪嶍傞偲偄偆曽朄偱丄扨弮偱偼偁傞偑廫暘幚梡揑側曽朄偱偁傞丅

(i) 儌僨儖偑夋柺忋偱傛偔尒偊傞傛偆偵昞帵偝偣偨屻丄僉乕儃乕僪忋偺 Print Screen 僉乕傪墴偡丅

(ii) 僷儚乕億僀儞僩傪婲摦偝偣丄[ 曇廤 仺 揬傝晅偗 ] 傛傝愭傎偳偺夋柺僨乕僞傪揬傝晅偗傞丅

(iii)乽恾乿偺僷儗僢僩乮弌側偐偭偨傜 [ 昞帵 仺 僣乕儖僶乕 ] 偐傜恾偵僠僃僢僋傪擖傟偰乽恾乿偺僷儗僢僩傪弌偡乯傛傝丄僩儕儈儞僌傾僀僐儞儃僞儞傪僋儕僢僋偟偰儃僞儞偑墴偝傟偰偄傞忬懺偵偟偰丄恾偺巐曈傪儅僂僗偱僪儔僢僌偟偰挷愡偟丄晄梫側晹暘傪嶍傞丅

(vi) 乽恾乿偺僷儗僢僩偺僩儕儈儞僌傾僀僐儞儃僞儞傪僋儕僢僋偟偰丄儃僞儞偑墴偝傟偰偄側偄忬懺偵栠偟丄恾偺偄偢傟偐偺妏傪儅僂僗偱僪儔僢僌偟偰丄恾傪岲傒偺戝偒偝偵挷愡偡傞丅